PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000303001
Common NameGSBRNA2T00000303001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 503aa    MW: 55576.3 Da    PI: 5.7428
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000303001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-153582148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed +l+++v+++G g+W+++ ++  + R++k+c++rw ++l
  GSBRNA2T00000303001 35 KGPWTSTEDGILINYVRKHGEGNWNAVQKYTSLARCGKSCRLRWANHL 82
                         79******************************************9986 PP

2Myb_DNA-binding49.68.9e-1688131146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++++eE+ l+v+ ++++G++ W+  a++++ gRt++++k++w++
  GSBRNA2T00000303001  88 KGAFSQEEERLIVQMHAKMGNK-WAQMAEHLP-GRTDNEIKNYWNT 131
                          799*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7983082IPR017930Myb domain
SMARTSM007176.8E-113484IPR001005SANT/Myb domain
SuperFamilySSF466895.03E-2934129IPR009057Homeodomain-like
PfamPF002491.2E-133582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-223689IPR009057Homeodomain-like
CDDcd001672.25E-93782No hitNo description
PROSITE profilePS5129425.21583137IPR017930Myb domain
SMARTSM007171.0E-1687135IPR001005SANT/Myb domain
PfamPF002491.4E-1488131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2590136IPR009057Homeodomain-like
CDDcd001673.21E-1290131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSYTAESDDD GMHSPAGDSI GYGCKSRGKG SVLKKGPWTS TEDGILINYV RKHGEGNWNA  60
VQKYTSLARC GKSCRLRWAN HLRPNLKKGA FSQEEERLIV QMHAKMGNKW AQMAEHLPGR  120
TDNEIKNYWN TRIKRRHRAG LPLYPPELHV EDLQWSEEYI TSNVTRVNRR RHHQDILQLG  180
NSKADVLFDD LNFATSLLPG ASDVLDMFTC NMLGTGASSS PYESYMPPIL PSPKQLRESG  240
SLFPICSSNI KQEFHSPEPF QNPRSCSISP CDVGHHSPYG NQRPSDVMIS DSHAFTDGML  300
LTSKPLFGAV KLELPSFQYS ETSGFDQWKT TPSPPHSDPL DSVDAYIQSP PPLEIEKDES  360
NCFSSCDTGL LDMLLPNAKI KTSAKRSLAL PEIPIPTQLS AGENSPDSAG NVVKTEELDQ  420
VWEPKRVDIT RPDVLLASSW LDQQGCFGIV RDSSNMSDAL ALLLGGEDIE NTYVTVGSSS  480
SGQAQQGVES CTWTNMPPVW SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-32321361104C-Myb DNA-Binding Domain
1msf_C8e-32321361104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000303001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895470.0AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146724.10.0PREDICTED: transcription factor GAMYB isoform X1
TrEMBLA0A078F5800.0A0A078F580_BRANA; BnaA05g27620D protein
STRINGBra034842.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38022859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.10.0myb domain protein 65
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]